What’s Up For July 2017

First and last appearances.

Actresses with passion in science

Austria

Taken By SusanK31

Wooahh....

Researchers discover self-assembling 2D and 3D materials

Self-assembly of matter is one of the fundamental principles of nature, directing the growth of larger ordered and functional systems from smaller building blocks. Self-assembly can be observed in all length scales from molecules to galaxies. Now, researchers at the Nanoscience Centre of the University of Jyväskylä and the HYBER Centre of Excellence of Aalto University in Finland report a novel discovery of self-assembling two- and three-dimensional materials that are formed by tiny gold nanoclusters of just a couple of nanometres in size, each having 102 gold atoms and a surface layer of 44 thiol molecules. The study, conducted with funding from the Academy of Finland and the European Research Council, has been published in Angewandte Chemie.

The atomic structure of the 102-atom gold nanocluster was first resolved by the group of Roger D Kornberg at Stanford University in 2007. Since then, several further studies of its properties have been conducted in the Jyväskylä Nanoscience Centre, where it has also been used for electron microscopy imaging of virus structures. The thiol surface of the nanocluster has a large number of acidic groups that can form directed hydrogen bonds to neighbouring nanoclusters and initiate directed self-assembly.

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Seeing stable topology using instabilities

We are most familiar with the four conventional phases of matter: solid, liquid, gas, and plasma. Changes between two phases, known as phase transitions, are marked by abrupt changes in material properties such as density. In recent decades a wide body of physics research has been devoted to discovering new unconventional phases of matter, which typically emerge at ultra-low temperatures or in specially-structured materials. Exotic “topological” phases exhibit properties that can only change in a quantized (stepwise) manner, making them intrinsically robust against impurities and defects.

In addition to topological states of matter, topological phases of light can emerge in certain optical systems such as photonic crystals and optical waveguide arrays. Topological states of light are of interest as they can form the basis for future energy-efficient light-based communication technologies such as lasers and integrated optical circuits.

However, at high intensities light can modify the properties of the underlying material. One example of such a phenomenon is the damage that the high-power lasers can inflict on the mirrors and lenses. This in turn affects the propagation of the light, forming a nonlinear feedback loop. Nonlinear optical effects are essential for the operation of certain devices such as lasers, but they can lead to the emergence of disorder from order in a process known as modulational instability, as is shown in Figure 1. Understanding the interplay between topology and nonlinearity is a fascinating subject of ongoing research.

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How to Make a Motor Neuron

A team of scientists has uncovered details of the cellular mechanisms that control the direct programming of stem cells into motor neurons. The scientists analyzed changes that occur in the cells over the course of the reprogramming process. They discovered a dynamic, multi-step process in which multiple independent changes eventually converge to change the stem cells into motor neurons.

“There is a lot of interest in generating motor neurons to study basic developmental processes as well as human diseases like ALS and spinal muscular atrophy,” said Shaun Mahony, assistant professor of biochemistry and molecular biology at Penn State and one of the lead authors of the paper. “By detailing the mechanisms underlying the direct programing of motor neurons from stem cells, our study not only informs the study of motor neuron development and its associated diseases, but also informs our understanding of the direct programming process and may help with the development of techniques to generate other cell types.”

The direct programming technique could eventually be used to regenerate missing or damaged cells by converting other cell types into the missing one. The research findings, which appear online in the journal Cell Stem Cell on December 8, 2016, show the challenges facing current cell-replacement technology, but they also outline a potential pathway to the creation of more viable methods.

“Despite having a great therapeutic potential, direct programming is generally inefficient and doesn’t fully take into account molecular complexity,” said Esteban Mazzoni, an assistant professor in New York University’s Department of Biology and one of the lead authors of the study. “However, our findings point to possible new avenues for enhanced gene-therapy methods.”

The researchers had shown previously that they can transform mouse embryonic stem cells into motor neurons by expressing three transcription factors – genes that control the expression of other genes – in the stem cells. The transformation takes about two days. In order to better understand the cellular and genetic mechanisms responsible for the transformation, the researchers analyzed how the transcription factors bound to the genome, changes in gene expression, and modifications to chromatin at 6-hour intervals during the transformation.

“We have a very efficient system in which we can transform stem cells into motor neurons with something like a 90 to 95 percent success rate by adding the cocktail of transcription factors,” said Mahony. “Because of that efficiency, we were able to use our system to tease out the details of what actually happens in the cell during this transformation.”

“A cell in an embryo develops by passing through several intermediate stages,” noted Uwe Ohler, senior researcher at the Max Delbrück Center for Molecular Medicine (MDC) in Berlin and one of the lead authors of the work. “But in direct programming we don’t have that: we replace the gene transcription network of the cell with a completely new one at once, without the progression through intermediate stages. We asked, what are the timing and kinetics of chromatin changes and transcription events that directly lead to the final cell fate?“

The research team found surprising complexity – programming of these stem cells into neurons is the result of two independent transcriptional processes that eventually converge. Early on in the process, two of the transcription factors – Isl1 and Lhx3 – work in tandem, binding to the genome and beginning a cascade of events including changes to chromatin structure and gene expression in the cells. The third transcription factor, Ngn2, acts independently making additional changes to gene expression. Later in the transformation process, Isl1 and Lhx3 rely on changes in the cell initiated by Ngn2 to help complete the transformation. In order for direct programming to successfully achieve cellular conversion, it must coordinate the activity of the two processes.

“Many have found direct programming to be a potentially attractive method as it can be performed either in vitro – outside of a living organism – or in vivo – inside the body and, importantly, at the site of cellular damage,” said Mazzoni. “However, questions remain about its viability to repair cells – especially given the complex nature of the biological process. Looking ahead, we think it’s reasonable to use this newly gained knowledge to, for instance, manipulate cells in the spinal cord to replace the neurons required for voluntary movement that are destroyed by afflictions such as ALS.”

“Before a scene, she would be muttering deprecations under her breath and making small moans. According to Vivien, the situation was stupid, the dialogue was silly, nobody could possibly believe the whole scene. And then…she would walk into the scene and do such a magnificent job that everybody on the set would be cheering.” -David O. Selznick